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Changelog

scDiffCom 1.1.0

  • Allow to use a custom LRI database

scDiffCom 1.0.0

CRAN release: 2023-11-03

01-11-2023

  • Prepare for CRAN release
  • Update links to the Nature Aging paper

scDiffCom 0.2.4

11-04-2023

  • Change default red-green colors in plots
  • Improve README and website

scDiffCom 0.2.3

08-05-2022

  • Remove mouse and rat LRIs with “homolog_orthology_confidence” of 0, but only if they are not already provided directly by one of the “source database”
  • Remove some miss-curated LRIs

scDiffCom 0.2.2

11-04-2022

  • Compute (permutation-based) p-values and logFC for each ligand and receptor gene independently

scDiffCom 0.2.1

20-01-2022

  • Fix a bug that appeared when ‘seurat_object[[]]’ contained a column named ‘cell_id’

scDiffCom 0.2.0

24-11-2021

  • New function BuildShiny() that creates a shiny app from the results
  • New function ReduceGO() to reduce GO terms by semantic similarity

scDiffCom 0.1.0.9000

09-11-2021

  • A rat LRI database (LRI_rat) has been added (based on orthology conversion)
  • run_interaction_analysis() accepts rat as species parameter
  • LRI datasets have a reduced size
  • Dataset gene_ontology_level is now available as data (instead of internal data)

scDiffCom 0.1

04-07-2021

  • All steps of run_interaction_analysis have been tested
  • All exported functions have been tested
  • LRI databases have been curated
  • Complete roxygen-based documentation
  • Vignette contains the main functionalities

scDiffCom 0.0.0.9000

  • Added a NEWS.md file to track changes to the package.
  • Added the first proper documentation
  • Added the first version of the vignette